FastQCFastQC Report
Wed 31 May 2023
EGAF00007946745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415491
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24760.5959214519688754No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22180.5338262441304384No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14340.34513382961363787No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6250.15042443759311272No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6250.15042443759311272No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6050.14561085559013312No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5990.14416678098923924No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5650.13598369158417392No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5450.1311701095811943No Hit
GCACCAGGAGATGCGGGTCAGTTCCGGCTGACGCCATTCCTCCA5060.12178362467538406No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4740.11408189347061669No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4300.10349201306406157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)