FastQCFastQC Report
Sun 21 May 2023
EGAF00007946746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415491
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58521.408454094071833No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36840.8866618049488437No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14430.34729994151497867No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13080.3148082629948663No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9020.21709254833438027No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6390.15379394499519844No Hit
CTGCGTGCCGAAGCTAAATTCTACCAGGGTA5900.1420006690878984No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5720.13766844528521677No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5710.1374277661850678No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5250.1263565275782147No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4320.10397337126435952No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4310.10373269216421054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)