FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405546
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15230.3755430949879915No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12750.3143909692118773No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10280.25348542458808615No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9240.22784098474648995No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8870.21871748211053738No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8680.2140324402163996No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6960.17162048201683655No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6200.15288031444028544No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6090.150167921764732No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6000.1479486913938246No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5890.14523629871827118No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC5670.13981151336716427No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5660.13956493221484123No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4320.10652305780355373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)