FastQCFastQC Report
Wed 31 May 2023
EGAF00007946748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405546
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36260.8941032583233468No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31200.769333195247888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14490.35729608971608645No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11960.2949110581783571No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10510.2591567910915161No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9530.23499183816385807No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8620.21255295330246138No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6530.1610174924669458No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6140.1514008275263472No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6020.1484418536984707No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5870.14474313641362507No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5630.13882518875787211No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG5260.12970168612191957No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4560.11244100545930671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)