FastQCFastQC Report
Sun 21 May 2023
EGAF00007946749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414548
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21390.5159836737844592No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17920.43227804741549836No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15030.3625635632061908No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13800.3328926927641673No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12710.3065989945675772No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11710.2824763356716231No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8860.21372675781815373No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8840.21324430464023467No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8480.20456014743769116No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7940.19153391163387593No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6140.14811312562115847No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6060.14618331290948214No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5810.14015264818549358No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5770.13918774182965543No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5600.1350868898173432No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5530.13339830369462644No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5380.12977990486023333No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5270.12712641238167838No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5120.12350801354728523No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5060.12206065401352797No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4710.11361772339994404No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4540.10951687138763185No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4400.10613969914219826No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4180.10083271418508832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)