FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414548
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21960.529733589355153No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19970.4817294981522043No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17120.412979920298735No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16240.3917519804702954No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14720.3550855389484451No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14180.34205930314462984No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13160.31745419107075656No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12230.29502011829751923No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10350.24966951957312544No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9110.21975742254214228No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9020.21758638324150642No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7470.1801962619527775No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6870.165722666615205No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6800.16403408049248822No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6280.15149029786659204No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6060.14618331290948214No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5700.13749915570693863No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5640.1360517961731814No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5260.12688518579271882No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5110.1232667869583257No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4840.11675366905641807No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4680.1128940436330654No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4210.10155639395196697No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4210.10155639395196697No Hit

[OK]Adapter Content

Adapter graph