FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374669
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17300.46174089663142664No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17030.45453453581694775No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14560.3886096794770851No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13620.36352086775260295No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13200.3523109731523024No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11310.30186644745095004No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8940.2386106136349685No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7910.21111968163899336No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7830.20898446361988848No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7690.20524783208645497No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7580.20231190731018578No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC7060.18843299018600418No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6240.1665470054901793No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6010.16040825368525286No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5980.1596075469280885No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5840.155870915394655No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5720.1526680883659977No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5720.1526680883659977No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5450.1454617275515188No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5030.1342518329512183No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4900.13078210367017287No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4890.13051520141778478No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG4830.12891378790345612No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4820.12864688565106802No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4580.12224123159375341No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4280.11423416402211019No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4080.10889611897434803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)