FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374669
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA38411.0251715514227224No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34110.910403582895836No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16950.4523993177978429No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15510.41396539345395533No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13550.3616525519858862No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT9830.26236491409751006No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8350.22286338074407008No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8220.2193936514630247No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7970.212721095153322No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7200.1921696217194377No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6850.18282804288585391No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6610.17642238882853933No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6600.1761554865761512No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6110.16307727620913393No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6080.1622765694519696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5870.15667162215181935No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5830.1556040131422669No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5320.1419919982704734No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5230.13958987799898043No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5020.13398493069883016No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5010.13371802844644207No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4880.13024829916539665No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4720.12597786312718692No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4580.12224123159375341No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4290.1145010662744983No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC4280.11423416402211019No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4060.1083623144695718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)