FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379511
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34230.9019501411026294No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32970.8687495224117351No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19510.5140825957613877No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17370.45769424338161474No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15740.414744236662442No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13630.3591463752038808No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12090.31856784124834325No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11500.3030215197978451No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10490.27640832545038224No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9560.2519031068928173No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8510.2242359246504054No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8330.21949297912313478No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8060.21237856083222884No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7810.20579113648879743No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7780.20500064556758565No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7750.2042101546463739No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7660.20183868188273857No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7590.19999420306657778No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7150.18840033622213848No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7090.18681935437971495No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7060.18602886345850317No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7050.18576536648476594No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6610.17417149964032663No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6440.16969205108679325No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6330.16679358437568345No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5790.15256474779387158No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5780.15230125082013432No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5660.14913928713528724No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5180.13649143239589892No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5160.13596443844842443No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5090.1341199596322636No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5090.1341199596322636No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4800.12647854739388317No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4750.1251610625251969No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4610.1214721048928753No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4590.1209451109454008No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4500.11857363818176549No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4480.11804664423429097No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4260.11224971081207132No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4150.10935124410096149No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4110.10829725620601248No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4020.10592578344237717No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT3830.10091934094136928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)