FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364905
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12030.32967484687795456No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10340.2833614228360806No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10230.2803469396144202No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9670.26500047957687617No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6110.16744084076677493No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5720.15675312752634246No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5300.14524328249818447No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5190.14222879927652401No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG5020.13757005247941245No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4560.12496403173428701No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4140.11345418670612899No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4120.11290609884764527No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT3780.10358860525342213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)