FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462037
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA11440.2475992182444263No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9780.21167135965301478No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9600.20777556775756056No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9500.20561123892675262No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8560.18526654791715813No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7480.1618917965444326No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7180.1553988100520088No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6390.13830061228862622No Hit
TTCGGTGCACTGTACAGCGGTCGTATCGCTG5810.12574750506994029No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5630.12185171317448601No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5400.1168737568636278No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5060.10951503883888088No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4670.10107415639872996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)