FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421681
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17740.42069716207275165No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15280.36235922415285493No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13280.31493000633180057No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10490.2487662474714298No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9720.23050599861032395No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9420.22339161593716578No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8190.19422264697721736No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8020.19019116346242776No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7430.17619954420521675No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7420.17596239811611147No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6470.15343351965111068No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5010.11881019064174103No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4960.11762446019621467No Hit
ACGAACGTTAACAGCACGTGGGCGGTTCGGGTCACGGCGCAGAT4270.10126138004795093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)