FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421681
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36410.8634489104322937No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20010.47452932429964834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16080.3813309112812766No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13900.3296330638563274No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13430.31848719766837963No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10950.2596749675702723No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8590.20370849054142823No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7840.18592253385853288No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7390.17525095984879566No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6740.159836464056953No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5150.12213023588921483No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4600.10908720098842489No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGC4500.10671574009737218No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4450.10553000965184582No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4370.10363284093900366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)