FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402996
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23100.5732066819521782No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20850.5173748622815115No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG13380.33201322097489805No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG13260.3290355239257958No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9350.23201222840921498No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7100.1761804087385483No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6840.16972873179882678No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT6790.16848802469503418No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6520.16178820633455418No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT5990.1486367110343527No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5960.14789228677207714No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5750.14268131693614827No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5700.14144060983235565No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT5210.12928168021518824No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA5190.1287853973736712No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4270.10595638666388747No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4120.10223426535250969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)