FastQCFastQC Report
Wed 31 May 2023
EGAF00007946770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402996
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54031.3407080963582765No Hit
TACGACGACTTCCATACCGATGAAGATAAAC14580.3617901914659203No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13240.32853924108427873No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9760.24218602666031425No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG8780.21786816742597942No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7820.19404659103316163No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7250.17990253004992607No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7210.17890996436689197No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7030.17444341879323866No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT6410.1590586507062105No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6380.15831422644393495No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6170.15310325660800603No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5810.14417016546069938No Hit
GCTAAAACCGCAGATACCCCGGCGACCTCTA5800.14392202403994084No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5700.14144060983235565No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4870.12084487190939859No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4260.10570824524312897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)