FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368115
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20520.5574344973717452No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16710.4539342325088627No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16290.44252475449248196No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14690.39906007633484103No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12470.3387528353911142No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12120.32924493704413027No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA12070.32788666585170395No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12060.3276150116132187No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG10800.2933865775640765No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8900.2417722722518778No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8710.23661084172065797No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8380.22764625185064452No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8240.22384309251185092No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8060.21895331621911632No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7930.21542181111880798No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT7890.21433519416486696No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG7420.2015674449560599No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7130.1936894720399875No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6540.1776618719693574No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5410.14696494302052346No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5380.1461499803050677No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4910.13338223109626068No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4610.125232603941703No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4250.11545305135623378No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4140.11246485473289597No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG3910.10621680724773508No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC3780.10268530214742676No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC3720.10105537671651521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)