FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368115
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36430.9896363908017874No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32990.8961873327628594No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20940.568843975388126No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20500.5568911888947747No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17860.4851744699346672No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15820.42975700528367494No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15630.4245955747524551No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12640.34337095744536356No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12520.3401111065835405No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC12040.32707170313624817No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10710.29094168941770915No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT8900.2417722722518778No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT8400.22818956032761503No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7840.21297692297244067No Hit
TACGACGACTTCCATACCGATGAAGATAAAC7270.1974926313787811No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7270.1974926313787811No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6640.18037841435420995No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6170.16761066514540293No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5860.15918938375236No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5130.1393586243429363No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4890.13283892261929017No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4790.13012238023443762No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4430.12034282764896839No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4380.1189845564565421No Hit
GGCGAAGGTGTAGTTGGCTTCGCGGATGTTC3970.10784673267864663No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC3960.10757507844016137No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT3910.10621680724773508No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3830.10404357333985303No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3770.1024136479089415No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA3760.10214199367045625No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3760.10214199367045625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)