FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405194
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34450.8502100228532505No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13640.3366288740701985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7090.17497791181508118No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5400.13326949559963872No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4440.1095771408263696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)