FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440027
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62421.418549316291955No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16680.37906764812159255No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG13030.29611819274726325No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8330.1893065652789488No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7740.17589829714994762No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4890.11112954432341651No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG4720.1072661450320094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)