FastQCFastQC Report
Sun 21 May 2023
EGAF00007946789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480204
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10770.2242796811355174No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10260.21365919484219206No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10120.21074376723225963No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9010.18762859118208094No Hit
GTACTCCGGTTTGGTCAGCTGCATGGTAATCGCTTCACGCTGCA8540.17784108420587916No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7470.15555888747282404No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7340.1528517046921725No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7020.14618787015518406No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6670.13889930113035293No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6260.13036126312983648No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5820.12119849064147736No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5540.11536763542161248No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5360.11161922849455648No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4850.10099874220123113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)