FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480204
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30240.6297323637454082No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11290.23510841225812362No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10940.22781984323329252No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10510.21886531557421426No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9840.20491291201239475No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9520.1982490774754063No Hit
CGTGCCTCTGCTAAACTGCAACGCGAAGCGC9230.1922099774262605No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8960.1865873670356765No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7840.16326394615621692No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7660.15951553922916092No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7310.15222697020432982No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6950.14473015635021783No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6420.13369318039833072No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6400.13327669073976894No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5870.12223971478788181No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5280.10995326986030936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)