FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441651
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65051.4728824343203117No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8510.19268608018548583No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7500.16981734446429422No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6500.14717503186905498No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5930.13426891368976862No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5080.11502294798381527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)