FastQCFastQC Report
Sun 21 May 2023
EGAF00007946801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497556
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16870.33905731214174883No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9500.19093328188183845No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8680.17445272491940605No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7970.16018297437876342No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7540.15154073109358543No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7180.14430536462227367No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6690.13445722692521045No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6270.12601596604201334No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5980.12018747638456775No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5710.11476095153108393No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5510.1107413034914663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)