FastQCFastQC Report
Wed 31 May 2023
EGAF00007946802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497556
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32320.6495751232022123No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17250.3466946434170224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17190.34548874900513715No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10960.22027671257104728No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9720.19535489472541787No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7780.15636430874112664No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7390.1485259950638722No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7290.1465161710440634No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6750.13566312133709574No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6350.12762382525786042No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6100.12259926520833836No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6060.12179533560041482No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5560.1117462155013707No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5010.10069218339242215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)