FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453782
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63071.3898744330978312No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17350.38234218192876757No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17310.38146070139406146No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15270.3365051941240507No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14890.3281311290443429No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12430.2739200761599182No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11060.24372936784623456No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10660.23491456249917364No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10140.22345531554799442No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9590.21133495819578565No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9100.20053682164563602No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9030.19899423070990035No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7990.17607573680754196No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7010.1544794637072427No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6800.1498516909000357No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6620.1458850284938583No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6380.14059614528562173No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6170.13596837247841473No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5720.1260517164629712No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5710.12583134632929469No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5550.12230542419047032No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5360.11811839165061638No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5270.11613506044752767No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4650.10247211215958323No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4650.10247211215958323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)