FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464594
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25420.5471443884337723No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23390.5034503243692342No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC20060.43177483996779986No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19420.41799937149425087No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15810.34029711963563886No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15660.3370684942121508No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15640.33663801082235245No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13820.29746402235069763No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13770.2963878138762016No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC12860.2768008196403742No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12540.2699130854035997No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10100.21739411184819435No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9780.21050637761141988No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9610.20684726879813342No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8620.1855383410031124No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8330.17929633185103552No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8190.17628294812244671No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG8160.1756372230377491No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7430.1599245793101073No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6920.148947252870248No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6070.1306517088038158No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5590.1203201074486541No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5440.11709148202516606No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5140.11063423117818999No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5050.10869705592409717No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5040.10848181422919796No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4910.10568367219550834No Hit
CGGAGCCTGAGTGGTGGTGGTGGAGCGGTCAGATTCAACGTTAG4820.10374649694141552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)