FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464594
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63311.3626951704068497No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA52961.1399200161861756No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35460.7632470501125714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA28700.6177436643607106No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA26270.5654399325002044No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21640.4657830277618738No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19230.413909779291166No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15520.334055110483562No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC13960.3004774060792864No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12320.2651777681158173No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10550.22707998811865845No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10320.22212942913597677No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10230.22019225388188396No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9070.1952242172735765No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC8400.18080302371532994No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8240.1773591565969427No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7870.16939521388567222No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7240.15583498710702248No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6390.1375394430405903No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6260.13474130100690063No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5980.12871453354972298No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5630.12118107422825092No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5320.11450858168637562No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5250.11300188982208122No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5190.111710439652686No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5080.10934278100879478No Hit
AAAGCAAAAGTAGTTGCCGAAAAAGGTTTCA4840.10417698033121392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)