FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531043
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26780.504290613001207No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24250.4566485199880236No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21910.41258429166752975No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18410.3466762578548253No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17050.3210662790018888No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16400.30882621557952933No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15180.2858525580791009No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15130.28491101473891944No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13930.2623139745745636No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12690.23896369973806264No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12630.23783384772984484No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12070.22728856231981212No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG11720.22069775893854168No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11300.21278879488101718No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10850.20431490481938375No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10610.1997954967865126No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9710.18284771666324573No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9630.18134124731895535No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9610.18096462998288274No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8930.16815964055641447No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8830.16627655387605147No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8480.15968575049478104No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7750.14593921772813123No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7690.14480936571991343No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7550.14217304436740527No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7430.1399133403509697No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7420.13972503168293338No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA7300.13746532766649783No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7280.13708871033042522No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6760.12729665959253772No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT6490.12221232555555765No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6390.12032923887519466No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6290.11844615219483168No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6190.1165630655144687No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6160.11599813951035981No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6110.11505659617017831No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6090.11467997883410572No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA6090.11467997883410572No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6000.11298520082177904No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5750.10827748412087157No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5620.1058294714363997No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5450.10262822407978263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)