FastQCFastQC Report
Sun 21 May 2023
EGAF00007946813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473296
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21250.44897907440586865No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG20320.4293296372671647No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13520.28565633345728675No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12980.27424698286062No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12810.27065515026537307No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12460.2632602008045705No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11590.24487846928771848No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11560.24424461647679255No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9870.2085375747946317No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8790.18571887360129813No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8500.17959162976234747No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8170.1726192488421622No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8090.17092897467969304No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8000.16902741624691525No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7810.16501301511105101No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7350.15529393867685337No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7300.15423751732531016No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7290.15402623305500152No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7150.15106825327068052No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG7060.1491666948379027No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7040.14874412629728542No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6650.1405040397552483No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6170.13036239478043338No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5840.12339001386024813No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5830.12317872958993949No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA5530.11684020148068017No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5520.11662891721037152No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5450.11514992731821103No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5380.1136709374260505No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5180.10944525201987763No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT5070.10712112504648254No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5040.10648727223555661No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT4910.10374057672154424No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA4760.10057131266691458No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4760.10057131266691458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)