FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473296
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65161.3767283053311248No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21610.4565853081369798No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG19910.4206669821845103No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16670.35221087860450967No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15650.33065988303302796No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15210.3213633751394476No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13450.28417734356512625No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13230.27952908961833606No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12260.2590345153983976No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11820.24973800750481728No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9930.20980528041648355No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9830.20769243771339713No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9210.19459281295426117No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8760.1850850207903722No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8650.1827608938169771No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8150.17219668030154492No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7910.16712585781413744No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7870.16628072073290287No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7760.1639565937595078No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7710.1629001724079646No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7390.15613907575808797No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7170.1514908218112978No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7070.14937797910821135No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC6710.14177174537710016No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6650.1405040397552483No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6570.13881376559277914No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6150.1299398262398161No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5840.12339001386024813No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5620.11874175991345796No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5600.11831919137284068No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5540.11705148575098881No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5480.11578378012913695No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC5370.11345965315574186No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5210.11007910483080356No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5090.10754369358709982No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC5030.10627598796524797No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5000.10564213515432204No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4780.10099388120753186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)