FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460278
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67381.463897905179044No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54001.1732040201791092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16580.3602170861957339No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12860.27939636480561747No Hit
CCGCAGGTAACTGATGTGATCGGCGACGAAG9520.2068315235575022No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8400.18249840313897253No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7280.15816528272044286No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT6790.14751954253733612No Hit
ACCGCAGCTGACGCGGCGGAACAGGATGGCA6420.13948092239907187No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5710.12405546213375394No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5650.1227519021113327No Hit
CAGGATGAAATGAAAAAAGACGACCAGATCG5610.12188286209638523No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5480.11905848204780589No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.11427876196559471No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5250.11406150196185783No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5200.11297520194317348No Hit
AACTCCGTAGCATATGCACGTGAAGGCGGTA4910.10667466183480417No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4870.1058056218198567No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4680.10167768174885612No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4660.10124316174138238No Hit

[OK]Adapter Content

Adapter graph