FastQCFastQC Report
Wed 31 May 2023
EGAF00007946821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462923
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20470.44219016985546195No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14760.31884352257286847No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12270.26505487953720164No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT11370.24561320133153894No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10800.23330013846795256No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5950.1285310948041035No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5670.1224825726956751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)