FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462923
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63381.3691261829721142No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20210.4365736850404927No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14620.3158192615186543No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13120.2834164645092164No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC11100.2397806978698401No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11080.23934866057638096No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6220.1343635982658023No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5950.1285310948041035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)