FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486192
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28840.5931812946325731No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24220.49815710665745216No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15170.31201665185770233No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14190.29186000592358574No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12950.26635567841511176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12660.26039095665909767No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11520.23694342975614574No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11300.2324184684239971No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9590.1972471780695692No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9150.188197255405272No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7080.14562148287096455No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6810.1400681212360549No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6490.13348635929838418No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6430.1322522789350709No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6370.13101819857175767No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5960.12258531608911706No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5760.11847171487807287No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5540.11394675354592423No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5450.11209563300095436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)