FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483095
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70731.4641012637265962No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21470.4444260445668037No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11770.24363737981142425No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11670.2415673935768327No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11540.23887641147186373No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8160.16891087674266966No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7710.15959593868700772No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7050.14593402953870357No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5920.12254318508781917No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5850.1210941947236051No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5660.11716122087788115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5220.10805328144567838No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4880.10101532824806714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)