FastQCFastQC Report
Wed 31 May 2023
EGAF00007946828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505480
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74271.4692965102476854No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59131.1697792197515233No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40410.7994381577906149No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG31470.6225765608926169No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG22340.44195616048112685No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG22240.4399778428424468No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21420.4237556382052703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20140.3984331724301654No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG13610.26924903062435707No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG11140.2203845849489594No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9580.18952282978555035No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7650.1513412993590251No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7570.14975864524808105No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6980.13808657117986864No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6290.12443617947297618No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG6220.12305135712590014No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6190.1224578618342961No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6110.12087520772335206No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5870.11612724539051991No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5800.11474242304344387No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5530.10940096541900768No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5530.10940096541900768No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5380.10643348896098757No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5290.10465300308617552No Hit
AACACTAATCATTCTCCGCAGAAACACCCAA5280.10445517132230751No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5280.10445517132230751No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5250.10386167603070348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)