FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463457
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65831.4204122496801215No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17610.37997052585245233No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14330.309198048578401No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14220.3068245813527469No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14140.30509842337045295No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10750.23195247887074746No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8230.1775785024284885No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6190.13356147387999318No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5680.12255721674286936No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5380.1160841243092671No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5040.10874795288451787No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4930.10637448565886372No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4850.10464832767656977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)