FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452415
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64381.423029740393223No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10310.22788811157897063No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8820.1949537482178973No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8090.17881812053092846No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8030.17749190455665706No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7090.15671452095973828No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5460.12068565365869832No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5010.11073903385166274No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT4900.10830763789883183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)