FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439941
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG28920.6573608733898408No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG21800.49552099031461033No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG21730.493929867868646No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG19710.44801462014224636No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG17840.4055089205143417No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG16690.37936905175921315No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG16270.36982231708342705No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13120.2982218070150316No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG13030.29617607815593455No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG11350.25798913945279023No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG10690.24298712781941215No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG10660.24230521819971315No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10190.2316219674910954No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG10080.22912163221886572No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG9710.2207114135759113No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG9270.21071007248699256No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT8730.19843569933241048No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8580.19502615123391545No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG8510.1934350287879511No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG8340.18957087427632344No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT7940.18047874601367003No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7490.17025010171818494No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6870.15615730291107216No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC6840.15547539329137317No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6610.15024741954034745No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT6530.14842899388781677No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6140.1395641688317297No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT5910.134336195080704No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5660.12865361491654562No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5560.12638058285088227No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5020.11410620969630018No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4990.11342430007660119No Hit
CGGCTGTTCGTTGTCGACTTCGATAATTGCAACGCAAGCGCCGC4690.10660520387961113No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4510.10251374616141709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)