FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439941
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60731.3804123734773526No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG31760.7219149840546801No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG24970.5675761067961386No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC23460.533253322604622No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG22180.5041585121641311No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC20160.45824326443773145No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG19950.45346989709983837No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG17940.407781952580005No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG16470.3743683812147538No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC13380.30413169038575627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13020.2959487749493682No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG12810.29117540761147515No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG11600.26367171961694863No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10910.24798779836387153No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG10820.24594206950477449No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG10230.23253118031736075No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10000.22730320656633501No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG9940.22593938732693702No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG9890.22480287129410534No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG9700.220484110369345No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9490.21571074303145193No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG9460.21502883341175294No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8840.20093603460464016No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8240.18729784221066006No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8060.18320638449246604No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7610.17297774019698095No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7350.16706785682625624No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC7070.16070336704239885No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6900.15683921253077118No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6470.14706517464841878No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6370.1447921425827554No Hit
GAAGCCGTGAACCGTGCGGTGGCTCGTGTCG6150.13979147203829603No Hit
GGTCCAGCTCACTCTAAAGAAGTGCCGGCGC5780.13138125339534165No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5340.12137991230642292No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5000.11365160328316751No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4780.10865093273870814No Hit
TCCAAAGAAATCCCGGCCCTGACCGCAGTGG4770.10842362953214181No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4670.10615059746647845No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4510.10251374616141709No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4450.1011499269220191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)