FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429895
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58681.3649844729526979No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23470.5459472661929076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15380.3577617790390677No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14910.34682887681875807No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13190.30681910699124204No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12920.3005385035880854No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12620.2935600553623559No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10660.24796752695425625No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9290.21609928005675805No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9020.20981867665360146No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8540.19865315949243423No Hit
GTCCACATCAAACTGCCGAAGCTGGCTGCAA7890.1835331883366869No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7800.18143965386896801No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7740.1800439642238221No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7040.1637609183637865No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6810.15841077472406054No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6700.15585201037462637No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6680.15538678049291105No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6650.15468893567033812No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6610.1537584759069075No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5820.13538189557915303No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5630.13096221170285768No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5510.12817083241256585No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5480.1274729875899929No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5420.12607729794484698No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5210.12119238418683631No Hit
AGCGTGCACATCAAGATCCCGAAAGTTTCCC5130.11933146465997511No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5110.11886623477825982No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5030.1170053152513986No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4910.11421393596110678No Hit
GCACTGGGCCAGCGTCGTGCCGATGCAGTTA4860.11305086125681853No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4760.11072471184824201No Hit
GCGCTGGGCCAGCGTCGCGCTGACGCAGTTA4540.10560718314937369No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4360.10142011421393597No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4330.100722269391363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)