FastQCFastQC Report
Sun 21 May 2023
EGAF00007946840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406017
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56691.3962469551767536No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15420.37978705325146483No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8700.2142767421068576No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8320.20491752808379946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7550.1859528049318132No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6790.1672343768856969No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6650.16378624540351758No Hit
ACTCTGGCTACCCCAGCCGTGCGTCGTCTGG4980.12265496272323574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)