FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529326
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36260.6850220846888306No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19190.3625365086921859No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15320.2894246645734387No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13530.255608075174845No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8720.1647377986344899No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7940.1500020781144323No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7860.1484907221636572No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7800.14735720520057582No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7730.1460347687436476No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7650.14452341279287242No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7520.14206745937286286No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7250.13696663303899675No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6990.13205472619897757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6800.1284652558158866No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6770.12789849733434594No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6760.12770957784049905No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6690.1263871413835708No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6560.1239311879635612No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6280.11864144213584824No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5790.10938438693735052No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5440.1027722046527093No Hit

[OK]Adapter Content

Adapter graph