FastQCFastQC Report
Wed 31 May 2023
EGAF00007946846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517470
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35780.6914410497226893No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22570.4361605503700698No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19160.3702630104160628No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15740.3041722225443021No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14610.28233520783813554No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14030.27112682860842174No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12080.23344348464645293No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11170.21585792413086746No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10710.20696851991419793No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9580.1851315052080314No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8340.1611687634065743No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7910.1528591029431658No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7310.14126422787794463No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7080.13681952576960985No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6840.13218157574352135No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6690.12928285697721606No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6560.12677063404641814No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6380.12329217152685179No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6210.12000695692503914No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5840.11285678396815274No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5610.10841208185981795No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5540.10705934643554216No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5450.10532011517575897No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5450.10532011517575897No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5200.10048891723191682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)