FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523270
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35260.6738395092399717No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18160.3470483689108873No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15600.29812525082653313No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12450.2379268828711755No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12000.22932711602041012No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10210.1951191545473656No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10080.1926347774571445No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10010.19129703594702543No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10000.19110593001700843No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7220.1379784814722801No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6840.13071645613163377No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6180.11810346475051121No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5450.10415273185926958No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5400.10319720220918455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)