FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496633
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19230.38720745500198334No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18500.37250847205079No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17320.34874847221187477No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16020.3225722012029003No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14790.29780542170979374No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14220.28632813365201265No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13790.2776698286259673No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG13500.2718305066316576No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG13450.27082372697746626No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12820.25813830333465554No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12700.2557220321645964No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12480.25129220168615457No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11910.23981491362837348No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11910.23981491362837348No Hit
TTCAGCACGCAGGCGGTCTGGAGTGAACTGCGCGCGGGTGCCCA11490.23135796453316637No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG11220.2259213544005332No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10860.21867254089035565No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG10450.2104169477259868No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA8780.17679050727599654No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8590.17296474459006952No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8410.16934033783498076No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8350.16813220224995118No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8240.16591728701073027No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8210.16531321921821546No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7970.1604806768780971No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG7680.1546413548837874No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7460.15021152440534558No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7440.14980881254366907No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7140.14376813461852112No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6650.13390169400744614No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6610.13309627028409307No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6590.13269355842241656No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6580.13249220249157828No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6230.12544474491223903No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6130.12343118560385637No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5920.11920271105625281No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5900.11879999919457629No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5710.11497423650864926No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5480.11034305009936915No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5410.1089335585835013No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5350.10772542299847172No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5350.10772542299847172No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5310.10691999927511864No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5120.10309423658919162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)