FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484830
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62301.2849864901099355No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41460.8551451024070292No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19400.40014025534723513No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18210.3755955695810903No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA12790.2638038075201617No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT12190.25142833570529877No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA12180.2512220778417177No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11630.23987789534476003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10980.22647113421199183No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10620.21904585112307406No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT10010.20646412144463008No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9630.19862632262855023No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9410.19408864962976713No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC9310.19202607099395663No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8830.18212569354206629No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8520.17573169977105377No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7710.15902481282098882No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7220.1489181775055174No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7120.14685559886970692No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6770.13963657364437018No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6240.12870490687457461No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6170.12726110182950726No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5880.12127962378565683No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.1190107872862653No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5580.11509188787822534No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5350.11034795701586123No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5350.11034795701586123No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5280.10890415197079388No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5130.10581028401707815No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4850.10003506383680878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)