FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510256
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13060.25594995453262676No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11860.23243234768429966No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9980.1955880969552538No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8320.16305540748173467No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7800.15286444451412623No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT7310.14326142171772602No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6960.13640211972029725No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6590.12915085760872974No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6150.12052773509767646No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5800.11366843310024771No Hit
ACGGTGCGCACGGGTGATAACGTCGTGGTCATCGGAACGGTCGT5760.11288451287197014No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5310.10406541030384749No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT5140.1007337493336678No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5110.10014580916245963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)