FastQCFastQC Report
Wed 31 May 2023
EGAF00007946854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510256
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50900.9975384904832084No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25150.4928898435295225No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13360.26182935624470854No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8810.1726584302781349No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7970.1561961054843059No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7950.15580414537016712No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT7540.14776896303032203No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7530.14757298297325264No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6640.1301307578940767No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6450.12640713680975824No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA6360.1246433162961337No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6220.1218995954971622No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6200.12150763538302342No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6150.12052773509767646No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6030.11817597441284376No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5280.1034774701326393No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5280.1034774701326393No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5270.10328149007556992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)