FastQCFastQC Report
Sun 21 May 2023
EGAF00007946855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507771
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15040.29619651378278794No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12510.24637090341906095No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11310.22273820285128532No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9540.18787996951381628No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9100.17921464597229853No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8910.17547280171573407No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8650.17035238325938268No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT8080.15912685048968925No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA7560.14888601357698647No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7210.14199314257805193No Hit
CAGGTTGGCCGGGTGCAGCGGGTGCGCCGGGTCGGTCACCGGAT6830.13450945406492296No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6690.13175230566534915No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5160.1016206124414352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)